Our Alumni

Dr. Dinesh Sharma

Thesis Title
A Machine-learning Augmented Physicochemical Approach to Eukaryotic Genome Annotation

October, 2025

Dr. Shashank Shekhar

Thesis Title
Developing a Revenue Model for Bioinformatics R&D in India using Management Approach

July, 2024

Dr. Amita Pathak

Thesis Title
Development of Novel Algorithms for Functional Annotation of Protein Sequences

September, 2021

Dr. Ruchika Bhat

Thesis Title
Automation of Computer-Aided Genomes to Hits Discovery Pipeline and its Application via Case Studies

October, 2019

Dr. Akhilesh Mishra

Thesis Title
A Physico-Chemical and Structural Characterization of Prokaryotic Genomes

September, 2019

Dr. Pradeep Pant

Thesis Title
Theoretical Studies on the Structure and Dynamics of Symmetric Nucleic Acids and Recognition Patterns in DNA-Ligand/Protein Systems

April, 2019

Dr. Abhilash Jayaraj

Thesis Title
Development of Some Novel Computational Techniques for Screening and Optimizing Hit Molecules for Protein Targeted Lead Molecule Discovery

October, 2018

Dr. Rahul Kaushik

Thesis Title
Development of Some Newer Algorithms for Improved Protein Tertiary Structure Prediction

May, 2018

Dr. Debarati DasGupta

Thesis Title
Computational Studies on Tertiary Structure Prediction of Small Proteins and Energetics of Folding

May, 2018

Dr. Ankita Singh

Thesis Title
In silico Structure Development of Soluble Proteins of Plasmodium vivax

April, 2018

Dr. Anjali Soni

Thesis Title
In silico Identification of Lead Molecules for ER and nsP2 Proteins and Intercalators for DNA: Some Methodological Advancements

August, 2017

Dr. Ashutosh Shandilya

Thesis Title
Computer-Aided Lead Molecule Identification: Some Case Studies for Malaria & Neurodegenerative Diseases

April, 2017

Dr. Avinash Mishra

Thesis Title
Development of Scoring Functions for Predicting Protein Structures and Functions

May, 2016

Dr. Hirdesh Kumar

Thesis Title
Identification of vaccine drug targets against malaria

Current Status
Product Quality Reviewer at the FDA

2016

Dr. Tanya Singh

Thesis Title
Automating Lead Molecule Discovery for Protein Targets via Sanjeevini Server

April, 2015

Dr. Ali Khosravi

Thesis Title
Drug Repurposing with the help of recent bioinformatics and Systems Biology approaches, Algorithm design and Combinational therapy

December, 2014

Dr. Goutam Mukherjee

Thesis Title
Accelerating Lead Molecule Discovery for Protein Targets via Sanjeevini Server

December, 2014

Dr. Priyanka Dhingra

Thesis Title
Development of a Homology/Ab initio Hybrid Methodology for Sampling Near-native Protein Conformations

November, 2014

Dr. Suhas Vasant Vasaikar

Thesis Title
A Boolean Analysis of Neurodegenerative Disease Networks

December, 2013

Dr. Garima Khandelwal

Thesis Title
Development of Energy Based Signatures for Deciphering Prokaryotic Genome Organization

November, 2012

Dr. Poonam Singhal

Thesis Title
Development of an ab initio Physico-Chemical Model for Analyzing Prokaryotic Genomes

May, 2008

Dr. Kumkum Bhushan

Thesis Title
Development and Assessment of Computer Algorithms for the Prediction of Tertiary Structures of Small Proteins

October, 2007

Dr. Saher Afshan Shaikh

Thesis Title
Computational Studies on the Dynamics, Thermodynamics and Structure of DNA-Minor Groove Binder Complexes...

March, 2007

Dr. Tarun Jain

Thesis Title
An All Atom Energy Based Computational Protocol for Predicting Binding Affinities of Protein-Ligand Complexes

March, 2007

Dr. Pooja Narang

Thesis Title
A Computational Pathway for Bracketing Native-Like Tertiary Structures...

December, 2005

Dr. N. Latha

Thesis Title
A Binding Free Energy Based Computational Pathway from Chemical Templates to Lead-like Molecules...

October, 2004

Dr. Parul Kalra

Thesis Title
Computational Analyses of the Binding Free Energies of Protease-Inhibitor Complexes: Implications to Drug Design

May, 2002

Dr. Dixit Surjit Bhima Rao

Thesis Title
Theoretical Studies on the Interaction and Binding Energies in Protein-DNA Complexes

May, 1999

Dr. Nidhi Arora

Thesis Title
Theoretical Studies on the Energetics of Specificity in some Protein-DNA Systems

March, 1997

Dr. E. Rajasekaran

Thesis Title
Poisson-Boltzmann Studies on some Chemical and Biochemical Systems

February, 1995